PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1578
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 246aa    MW: 27706.8 Da    PI: 7.1338
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1578genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding651.4e-20954147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEdell ++v+++G ++W++++r ++ gR++k+c++rw + 
      Gh_D04G1578  9 KGPWSPEEDELLRKLVHRHGARNWSLVSRSIP-GRSGKSCRLRWCNQ 54
                     79******************************.***********985 PP

2Myb_DNA-binding54.42.9e-1763105347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T eEd  +v+a++++G++ W+tIar ++ gRt++ +k++w++ 
      Gh_D04G1578  63 PFTSEEDGVIVKAHAKYGNK-WATIARLLN-GRTDNAVKNHWNST 105
                      89******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.866459IPR017930Myb domain
SuperFamilySSF466891.59E-316102IPR009057Homeodomain-like
SMARTSM007173.5E-17857IPR001005SANT/Myb domain
PfamPF002496.9E-20954IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-251062IPR009057Homeodomain-like
CDDcd001672.02E-141153No hitNo description
SMARTSM007173.6E-1360108IPR001005SANT/Myb domain
PROSITE profilePS5129420.93761110IPR017930Myb domain
PfamPF002499.6E-1463105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-2363110IPR009057Homeodomain-like
CDDcd001675.48E-963106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDRDVDRVKG PWSPEEDELL RKLVHRHGAR NWSLVSRSIP GRSGKSCRLR WCNQLSPEVE  60
HRPFTSEEDG VIVKAHAKYG NKWATIARLL NGRTDNAVKN HWNSTLKRKL SEAEDGDSVQ  120
ESEKRSVKSP RRESPSGSEV SDLGLSVAKS NQHSADVVST ELTLGRSWNE SFEFNNSSSS  180
EKKNEQPLEE KQVAGKNMTT VALALAATAA LTPAAMQEMI RKEVRDYMAE FDCNSENLRD  240
LWGRED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-3861104108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461001.10.0PREDICTED: transcription factor MYB44-like
SwissprotQ9FDW11e-65MYB44_ARATH; Transcription factor MYB44
TrEMBLA0A0D2V6S90.0A0A0D2V6S9_G
STRINGVIT_07s0129g01050.t011e-71(Vitis vinifera)
STRINGPOPTR_0009s09890.13e-72(Populus trichocarpa)
STRINGGSMUA_Achr4P20150_0013e-72(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.15e-64myb domain protein r1